Horseshoe
crabs are marine invertebrates well known for their exceptionally low
rates of diversification during their entire evolutionary history.
Despite the low species diversity in the group, the phylogenetic
relationships among the extant species, especially among the three Asian
species are still unresolved. Here we apply a new set of molecular
genetic data in combination with a wide geographic sampling of the
intra-specific diversity to reinvestigate the evolutionary history among
the four living limulid xiphosurans. Our analysis of the intraspecific
diversity reveals low levels of connectivity among Carcinoscorpius rotundicauda
lineages, which can be explained by the estuarine-bound ecology of this
species. Moreover, a clear genetic break across the Thai–Malay
Peninsula suggests the presence of cryptic species in C. rotundicauda. The limulid phylogeny finds strong support for a monophyletic genus Tachypleus
and a diversification of the three Asian species during the Paleogene
period, with speciation events well separated in time by several million
years. The tree topology suggests that the three Asian species
originated in central South East Asia from a marine stem group that
inhabited the shallow coastal waters between the Andaman Sea, Vietnam,
and Borneo. In this region C. rotundicauda probably separated from the Tachypleus stem group by invading estuarine habitats, while Tachypleus tridentatus most likely migrated northeast along the Southern coast of China and towards Japan.
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